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Name Organization Description Links
2007BioE215 Fox Stanford University Submitted coursework for BIOE215 Spring 2007
2D Difference Gel Electrophoresis University of Florida 1D and 2D SDS PAGE Native gel electrophoresis 2D DIGE (Cy2, Cy3, and Cy5 fluorescent dye labeling) 2D gel-based PTM...
3d Brain Atlas Reconstructor 3d Brain Atlas Reconstructor 3dBAR httpwww.3dbar.org is a software package for reconstructing three-dimensional models of brain structures from 2-D delineations...
3D RNA Modeling & Simulation Workshop, UIC Chicago, March 2010 Stanford University The structure and dynamics of molecules is central to understanding biological function, and yet most experimentalists find existing structural modeling...
3D RNA Modeling and Simulation Workshop, June 19, 2009 Stanford University The structure and dynamics of molecules is central to understanding biological function, and yet most experimentalists find existing structural modeling...
454 Sequencing University of Florida Services Include: Library construction and titration Sample preparation for titration for samples that need no library construction Production sequencing using...
A Coarse-Grained Physical Model for RNA University of Texas at Austin This project aims to develop a coarse-grained (CG) model for RNA at the functional group, residue as well as secondary...
A Python implementation of the multistate Bennett acceptance ratio (MBAR) University of California, Berkeley A Python implementation of the multistate Bennett acceptance ratio (MBAR) method for estimation of expectations and free energy differences (and...
A survey of gene expression in 17 mouse tissues with biological replication The Jackson Laboratory A tissue survey was performed examining gene expression profiles across 17 mouse tissues. The unique feature of this tissue survey...
A Visualization Tool for OpenSim Utrecht University This project is a visualization tool for OpenSim. It allows the visualization of musculoskeletal data or simulation results within the...
ABI 377 Sequencer Analysis Utilities University of Texas Southwestern Medical Center at Dallas "Macintosh C programs for making gel-specific matrices, merging 2 partially run gel files, or cutting a single gel image...
Academic Health Center Integrated Data Repository University of Florida This data repository is a collection of disparate data collected and stored in different formats and in different server locations....
ACTSI Request Submission Tool Emory University (partnering with Morehouse School of Medicine and Georgia Institute of Technology) A web-based tool for allowing individual such as researchers, community physicians, community advocate submitting their requests to the ACTSI.
Adaptively Sampled Particle Fluids Stanford University This project presents geometric feature-size based adaptive sampling algorithms for Lagrangian particle fluids. This adaptive sampling strategy allows using smaller...
Addama Institute for Systems Biology "Data management - An adaptable data management system designed to support the mining and analysis of biological experiment data that...
Adhesome Mount Sinai School of Medicine, Ma'ayan Laboratory Literature-based protein-protein interaction network extracted from publications describing functional interaction in adhesion complexes of mammalian cells.
Adun: high performance productivity molecular simulations code Jordi Villà Objectives Adun is a new extendible molecular simulation program that also includes data management and analysis capabilities. What follows...
Advanced Imaging Core Institute for Genomics and Systems Biology The Center?s Advanced Imaging Core (AIC) is currently employing a confocal imaging system coupled to a microfluidics platform to measure...
Advanced Normalization Tools Advanced Normalization Tools ANTS Image registration with variable transformation models elastic diffeomorphic unbiased and similarity metrics landmarks cross-correlation mutual...
Advanced Postgraduate Program in Clinical Investigation (APPCI) University of Florida The Advanced Postgraduate Program in Clinical Investigation (APPCI) provides a comprehensive didactic curriculum and training program in clinical and translational...
Aerobiology Core Duke University The Aerobiology Shared Resource was built with NIAID funding to support basic research in emerging infections and biodefense. The Aerobiology...
Affymetrix expression data used to estimate p-values in small microarray experiments The Jackson Laboratory Microarray data typically have small numbers of observations per gene, which can result in low power for statistical tests. We...
AG Holley State Hospital University of Florida A.G. Holley State Hospital, part of the Florida Department of Health, is a center of excellence in the diagnosis, treatment...
Agent based model for dendritic cell response to viral infection Mount Sinai School of Medicine This agent based model (ABM) simulates an important part of the IFNB1-DDX58 positive feedback loop, which is activated in dendritic...
Aging and Rehabilitation Research Center University of Florida The Aging and Rehabilitation Research Center (ARRC), a 9,500 sq ft clinical research facility used for recruitment, tracking and assessments...